AFP Specimens
This data dictionary is mostly machine-generated and still needs to be validated by a human. If you notice issues or want to contribute to improve don’t hesitate to send an email to webifa@novel-t.ch.
| Variable | Variable name in the data entry | Description | Data type | Variable options | Variable name in the exports | |
|---|---|---|---|---|---|---|
| Allowed Values | Required | Pak_Incon.Rec | ||||
| IDCODE | IDCODE - EPID Country - Specimen ID | N/A | text | N/A | Yes | N/A |
| RIDCODE | RIDCODE - EPID Specimen Region | N/A | text | N/A | N/A | N/A |
| BARCODE | BARCODE - Barcode | N/A | text | N/A | N/A | N/A |
| SPPROCDSPTLAB | SPPROCDSPTLAB - Destination lab name for sample processing | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| SPECNO | SPECNO - Specimen number | N/A | text | N/A | Yes | CSPEC |
| DSTCOLL | DSTCOLL - Date of specimen collection | N/A | datetime | N/A | N/A | CYEAR |
| DSTSENT | DSTSENT - Date specimen sent to NPL by EPI or the field | N/A | datetime | N/A | N/A | CDSTSENT |
| SPPROCRECVLAB | SPPROCRECVLAB - Lab name receiving sample for sample processing | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| DSTLAB | DSTLAB - Date specimen received in lab | N/A | datetime | N/A | Yes | CDSTLAB |
| LABSER | LABSER - Lab serial number | N/A | text | N/A | Yes | CLABSER |
| SPECTYP | SPECTYP - Specimen received in lab - reason | N/A | text | 0 = Isolation only (isolation lab) | N/A | N/A |
| 1 = Isolation and ITD (ITD lab) | ||||||
| 2 = Received for ITD | ||||||
| 3 = Received for double-check/confirmation | ||||||
| 4 = Problems with isolation identification | ||||||
| 5 = Sequencing | ||||||
| 6 = Follow-up | ||||||
| 7 = Other | ||||||
| SPECREC | SPECREC - Type of specimens received | N/A | text | 1 = Stool only | N/A | N/A |
| 2 = Isolate only | ||||||
| 3 = Stool extract/suspension only | ||||||
| 4 = Stool + isolate | ||||||
| 5 = Stool + stool extract/suspension | ||||||
| 6 = Isolate + stool extract/suspension | ||||||
| 7 = Stool + isolate + stool extract/susp | ||||||
| 9 = Other | ||||||
| SPECSRC | SPECSRC - Source of isolate-s - if isolate-s received | N/A | text | 1 = L-arm only | N/A | N/A |
| 2 = R-arm only | ||||||
| 3 = Both arms | ||||||
| 4 = Unknown arm | ||||||
| SPECDES | SPECDES - Which specimen is described here | N/A | text | 1 = Stool | N/A | N/A |
| 2 = Isolate (L-arm) | ||||||
| 3 = Isolate (R-arm) | ||||||
| 4 = Isolate (unknown cell line) | ||||||
| 5 = Stool extract/suspension | ||||||
| 6 = Isolate (both arms) | ||||||
| 9 = Other | ||||||
| STCOND | STCOND - Condition of specimen upon arrival | N/A | text | 1 = Good | N/A | CSTCOND |
| 2 = Poor | ||||||
| 9 = Unknown | ||||||
| STTEMP | STTEMP - Temperature of stool on arrival in lab | N/A | number | 1 = Unsatisfactory | N/A | N/A |
| 2 = Satisfactory | ||||||
| STLEAK | STLEAK - Leakage of stool on arrival in lab | N/A | number | 1 = Yes | N/A | N/A |
| 2 = No | ||||||
| STQUANT | STQUANT - Quantity of stool on arrival in lab | N/A | number | 1 = Unsatisfactory | N/A | N/A |
| 2 = Satisfactory | ||||||
| STDRY | STDRY - Dryness of stool on arrival in lab | N/A | number | 1 = Yes | N/A | N/A |
| 2 = No | ||||||
| LBLPRB | LBLPRB - Labelling problems with specimens on arrival | N/A | number | 1 = Yes | N/A | N/A |
| 2 = No | ||||||
| NPL | NPL - Specimen sent by which laboratory | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| LABNO | LABNO - Lab serial number in laboratory that sent specimen | N/A | text | N/A | N/A | N/A |
| NPLLR | NPLLR - Preliminary L-arm result obtained in lab | N/A | text | 1 = L20B positive isolate | N/A | N/A |
| 7 = Negative | ||||||
| NPLRLR | NPLRLR - Preliminary R-arm result obtained in lab | N/A | text | 1 = L20B positive isolate | N/A | N/A |
| 3 = NPEV positive | ||||||
| 7 = Negative | ||||||
| SPVIREFLAB | SPVIREFLAB - Lab name referring sample for virus isolation | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| SPVIRECVLAB | SPVIRECVLAB - Lab name receiving sample for virus isolation | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| DSTPROC | DSTPROC - Date of stool processing | N/A | datetime | N/A | N/A | N/A |
| DSTL20B | DSTL20B - Date stool inoculated in L20B cells | N/A | datetime | N/A | N/A | N/A |
| DL | DL - Date L20B becomes positive | N/A | datetime | N/A | N/A | N/A |
| DLR | DLR - Date L20B+ passed to RD becomes positive | N/A | datetime | N/A | N/A | N/A |
| DLEND | DLEND - Last day of observation (L-arm) | N/A | datetime | N/A | N/A | N/A |
| DSTRD | DSTRD - Date stool inoculated in RD cells | N/A | datetime | N/A | N/A | N/A |
| DR | DR - Date RD becomes positive | N/A | datetime | N/A | N/A | N/A |
| DRL | DRL - Date RD+ passed to L20B becomes positive | N/A | datetime | N/A | N/A | N/A |
| DRLR | DRLR - Date L20B+ passed to RD becomes positive | N/A | datetime | N/A | N/A | N/A |
| DRDEND | DRDEND - Last day of observation (R-arm) | N/A | datetime | N/A | N/A | N/A |
| VIL20B | VIL20B - L20B positive isolate obtained | N/A | number | N/A | N/A | CL20B |
| VINPEV | VINPEV - Non-polio enterovirus detected (R-arm) | N/A | number | N/A | N/A | N/A |
| DVIREP | DVIREP - Date virus isolation results reported to EPI/WHO | N/A | datetime | N/A | N/A | CDCRES |
| SPITDREFLAB | SPITDREFLAB - Lab name referring isolates for ITD | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| RRL | RRL - Specimen sent to which laboratory | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| SPECITD | SPECITD - Type of specimen sent | N/A | text | 1 = Stool only | N/A | N/A |
| 2 = Isolate only | ||||||
| 3 = Stool extract/suspension only | ||||||
| 4 = Stool + isolate | ||||||
| 5 = Stool + stool extract/suspension | ||||||
| 6 = Isolate + stool extract/suspension | ||||||
| 7 = Stool + isolate + stool extract/susp | ||||||
| 9 = Other | ||||||
| SRCITD | SRCITD - Source of isolate(s) - if isolate(s) sent | N/A | text | 1 = L-arm only | N/A | N/A |
| 2 = R-arm only | ||||||
| 3 = Both arms | ||||||
| 4 = Unknown arm | ||||||
| DTORRL | DTORRL - Date specimen sent | N/A | datetime | N/A | N/A | N/A |
| WHYSEND | WHYSEND - Reason for sending specimen | N/A | number | 1 = Sent for ITD | N/A | N/A |
| 2 = Sent for comparative culture | ||||||
| 3 = Sent for parallel testing | ||||||
| 9 = Sent for other reason | ||||||
| SPITDRECVLAB | SPITDRECVLAB - Lab name receiving isolates for ITD | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| DLRITP | DLRITP - Date L20B+ isolate (L-arm) referred for rRT-PCR ITD | N/A | datetime | N/A | N/A | N/A |
| DLRPCR | DLRPCR - Date of rRT-PCR ITD test setup | N/A | datetime | N/A | N/A | N/A |
| DLRPCS | DLRPCS - Date rRT-PCR ITD test result available | N/A | datetime | N/A | N/A | N/A |
| LRPCR1 | LRPCR1 - Polio type 1 rRT-PCR ITD result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Indeterminate | ||||||
| 4 = NSL+SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| LRPCR2 | LRPCR2 - Polio type 2 rRT-PCR ITD result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Indeterminate | ||||||
| 4 = NSL+SL | ||||||
| 5 = PV2+_nOPV2 not-tested | ||||||
| 10 = PV2+_nOPV2+ | ||||||
| 11 = PV2+_nOPV2- | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| LRPCR3 | LRPCR3 - Polio type 3 rRT-PCR ITD result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Indeterminate | ||||||
| 4 = NSL+SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| LRNPEV | LRNPEV - Non-polio enterovirus | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| LRNEV | LRNEV - Non-enterovirus | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| DLRVDP | DLRVDP - Date poliovirus referred for rRT-PCR VDPV | N/A | datetime | N/A | N/A | N/A |
| DLRVDA | DLRVDA - Date of rRT-PCR VDPV test setup | N/A | datetime | N/A | N/A | N/A |
| DLRVDS | DLRVDS - Date rRT-PCR VDPV result available | N/A | datetime | N/A | N/A | N/A |
| LRVDP1 | LRVDP1 - Polio type 1 rRT-PCR VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| LRVDP2 | LRVDP2 - Polio type 2 rRT-PCR VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| LRVDP3 | LRVDP3 - Polio type 3 rRT-PCR VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| DLRTYP | DLRTYP - Date poliovirus mixture referred for serotyping | N/A | datetime | N/A | N/A | N/A |
| DLRNA | DLRNA - Date of neutralization assay setup | N/A | datetime | N/A | N/A | N/A |
| DLRNAS | DLRNAS - Date neutralization assay result available | N/A | datetime | N/A | N/A | N/A |
| LRNA1 | LRNA1 - Polio type 1 serotype result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| LRNA2 | LRNA2 - Polio type 2 serotype result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| LRNA3 | LRNA3 - Polio type 3 serotype result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| DLRITE | DLRITE - Date monotypic poliovirus referred for ELISA | N/A | datetime | N/A | N/A | N/A |
| DLREIA | DLREIA - Date of ELISA test setup | N/A | datetime | N/A | N/A | N/A |
| DLREIS | DLREIS - Date ELISA result available | N/A | datetime | N/A | N/A | N/A |
| LREIA1 | LREIA1 - Polio type 1 ELISA result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Double reactive | ||||||
| 4 = Non-reactive | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| LREIA2 | LREIA2 - Polio type 2 ELISA result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Double reactive | ||||||
| 4 = Non-reactive | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| LREIA3 | LREIA3 - Polio type 3 ELISA result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Double reactive | ||||||
| 4 = Non-reactive | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| DRLRITP | DRLRITP - Date L20B+ isolate (R-arm) referred for rRT-PCR ITD | N/A | datetime | N/A | N/A | N/A |
| DRLRPCR | DRLRPCR - Date of rRT-PCR ITD test setup | N/A | datetime | N/A | N/A | N/A |
| DRLRPCS | DRLRPCS - Date rRT-PCR ITD test result available | N/A | datetime | N/A | N/A | N/A |
| RLRPCR1 | RLRPCR1 - Polio type 1 rRT-PCR ITD result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Indeterminate | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| RLRPCR2 | RLRPCR2 - Polio type 2 rRT-PCR ITD result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Indeterminate | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| 5 = PV2+_nOPV2 not-tested | ||||||
| 10 = PV2+_nOPV2+ | ||||||
| 11 = PV2+_nOPV2- | ||||||
| RLRPCR3 | RLRPCR3 - Polio type 3 rRT-PCR ITD result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Indeterminate | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| RLRNPEV | RLRNPEV - Non-polio enterovirus | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| RLRNEV | RLRNEV - Non-enterovirus | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| DRLRVDP | DRLRVDP - Date poliovirus referred for rRT-PCR VDPV | N/A | datetime | N/A | N/A | N/A |
| DRLRVDA | DRLRVDA - Date of rRT-PCR VDPV test setup | N/A | datetime | N/A | N/A | N/A |
| DRLRVDS | DRLRVDS - Date rRT-PCR VDPV result available | N/A | datetime | N/A | N/A | N/A |
| RLRVDP1 | RLRVDP1 - Polio type 1 rRT-PCR VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| RLRVDP2 | RLRVDP2 - Polio type 2 rRT-PCR VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| RLRVDP3 | RLRVDP3 - Polio type 3 rRT-PCR VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| DRLRTYP | DRLRTYP - Date poliovirus mixture referred for serotyping | N/A | datetime | N/A | N/A | N/A |
| DRLRNA | DRLRNA - Date of neutralization assay setup | N/A | datetime | N/A | N/A | N/A |
| DRLRNAS | DRLRNAS - Date neutralization assay result available | N/A | datetime | N/A | N/A | N/A |
| RLRNA1 | RLRNA1 - Polio type 1 serotype result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| RLRNA2 | RLRNA2 - Polio type 2 serotype result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| RLRNA3 | RLRNA3 - Polio type 3 serotype result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| DRLRITE | DRLRITE - Date monotypic poliovirus referred for ELISA | N/A | datetime | N/A | N/A | N/A |
| DRLREIA | DRLREIA - Date of ELISA test setup | N/A | datetime | N/A | N/A | N/A |
| DRLREIS | DRLREIS - Date ELISA result available | N/A | datetime | N/A | N/A | N/A |
| RLREIA1 | RLREIA1 - Polio type 1 ELISA result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Double reactive | ||||||
| 4 = Non-reactive | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| RLREIA2 | RLREIA2 - Polio type 2 ELISA result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Double reactive | ||||||
| 4 = Non-reactive | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| RLREIA3 | RLREIA3 - Polio type 3 ELISA result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = Double reactive | ||||||
| 4 = Non-reactive | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| DFRES | DFRES - Date final rRT-PCR ITD+VDPV result available | N/A | datetime | N/A | N/A | N/A |
| DRRL | DRRL - Date referred specimen arrived at laboratory | N/A | datetime | N/A | N/A | N/A |
| DITDREC | DITDREC - Date rRT-PCR ITD+VDPV results received from laboratory | N/A | datetime | N/A | N/A | N/A |
| ITDP1 | ITDP1 - Polio type 1 final rRT-PCR ITD+VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = NSL+SL | ||||||
| 4 = Discordant | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| ITDP2 | ITDP2 - Polio type 2 final rRT-PCR ITD+VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = NSL+SL | ||||||
| 4 = Discordant | ||||||
| 5 = PV2+_nOPV2 not-tested | ||||||
| 10 = PV2+_nOPV2+ | ||||||
| 11 = PV2+_nOPV2- | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| ITDP3 | ITDP3 - Polio type 3 final rRT-PCR ITD+VDPV result | N/A | number | 1 = NSL | N/A | N/A |
| 2 = SL | ||||||
| 3 = NSL+SL | ||||||
| 4 = Discordant | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| ITDENT | ITDENT - Non-polio enterovirus result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| ITDNEV | ITDNEV - Non-enterovirus result | N/A | number | 1 = Positive | N/A | N/A |
| 7 = Negative | ||||||
| DIRES | DIRES - Date final rRT-PCR ITD+VDPV result reported to EPI/NPL | N/A | datetime | N/A | N/A | CDIRES |
| NPEV | NPEV - If non-polio enterovirus isolated - type of NPEV | N/A | text | N/A | N/A | N/A |
| DSQSENT | DSQSENT - Date isolate sent to GSL for sequencing | N/A | datetime | N/A | N/A | N/A |
| SPSEQREFLAB | SPSEQREFLAB - Lab name referring isolates for sequencing | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL IRQ = NPL IRQ | ||||||
| NPL JOR = NPL JOR | ||||||
| NPL KEN = NPL KEN | ||||||
| NPL MOR = NPL MOR | ||||||
| NPL OMA = NPL OMA | ||||||
| NPL SAA = NPL SAA | ||||||
| NPL SUD = NPL SUD | ||||||
| NPL SYR = NPL SYR | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL KUW = RRL KUW | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| OTH LAB = OTH LAB | ||||||
| SRCSEQ | SRCSEQ - Source of isolate(s) sent for sequencing | N/A | number | 1 = L-arm only | N/A | N/A |
| 2 = R-arm only | ||||||
| 3 = Both L- and R-arms | ||||||
| EOP | EOP - Specimen not processed further | N/A | number | 1 = Not processed further | N/A | N/A |
| COMMENT | COMMENT | N/A | text | N/A | N/A | CCOMM |
| SPSEQRECVLAB | SPSEQRECVLAB - Lab name receiving isolates for sequencing | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL OMA = NPL OMA | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| CDC = CDC | ||||||
| NIID = NIID | ||||||
| OTHER = OTHER | ||||||
| DSQREC | DSQREC - Date sequencing results received from GSL | N/A | datetime | N/A | N/A | N/A |
| DSQRECR | DSQRECR - Date sequencing results received from ITD laboratory | N/A | datetime | N/A | N/A | N/A |
| PAKP1 | PAKP1 - Polio type 1 sequencing result (PAK) | N/A | number | 1 = Wild | N/A | N/A |
| 2 = SL | ||||||
| 3 = Wild/SL mix | ||||||
| 4 = VDPV | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| PAKP2 | PAKP2 - Polio type 2 sequencing result (PAK) | N/A | number | 1 = Wild | N/A | N/A |
| 2 = SL | ||||||
| 3 = Wild/SL mix | ||||||
| 4 = VDPV | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| PAKP3 | PAKP3 - Polio type 3 sequencing result (PAK) | N/A | number | 1 = Wild | N/A | N/A |
| 2 = SL | ||||||
| 3 = Wild/SL mix | ||||||
| 4 = VDPV | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| DPAKSQ | DPAKSQ - Date sequencing result available (PAK) | N/A | datetime | N/A | N/A | N/A |
| SQP1 | SQP1 - Polio type 1 sequencing result | N/A | number | 1 = Wild | N/A | N/A |
| 2 = SL | ||||||
| 3 = Wild/SL mix | ||||||
| 4 = VDPV | ||||||
| 11 = aVDPV | ||||||
| 12 = iVDPV | ||||||
| 13 = cVDPV | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| SQP2 | SQP2 - Polio type 2 sequencing result | N/A | number | 1 = Wild | N/A | N/A |
| 2 = SL | ||||||
| 3 = Wild/SL mix | ||||||
| 17 = nOPV2-L | ||||||
| 4 = VDPV | ||||||
| 11 = aVDPV | ||||||
| 12 = iVDPV | ||||||
| 13 = cVDPV | ||||||
| 10 = VDPV2-n | ||||||
| 15 = aVDPV2-n | ||||||
| 16 = iVDPV2-n | ||||||
| 14 = cVDPV2-n | ||||||
| 5 = NPEV | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| SQP3 | SQP3 - Polio type 3 sequencing result | N/A | number | 1 = Wild | N/A | N/A |
| 2 = SL | ||||||
| 3 = Wild/SL mix | ||||||
| 4 = VDPV | ||||||
| 11 = aVDPV | ||||||
| 12 = iVDPV | ||||||
| 13 = cVDPV | ||||||
| 7 = Negative | ||||||
| 9 = Not done | ||||||
| WPV1NTCCM | WPV1NTCCM - NT changes with closest WPV1 match | N/A | number | N/A | N/A | N/A |
| WPV1EPIDCM | WPV1EPIDCM - EPID of WPV1 closest match | N/A | text | N/A | N/A | N/A |
| WPV1CLUS | WPV1CLUS - Cluster WPV1 | N/A | text | N/A | N/A | N/A |
| WPV2NTCCM | WPV2NTCCM - NT changes with closest WPV2 match | N/A | number | N/A | N/A | N/A |
| WPV2EPIDCM | WPV2EPIDCM - EPID of WPV2 closest match | N/A | text | N/A | N/A | N/A |
| WPV2CLUS | WPV2CLUS - Cluster WPV2 | N/A | text | N/A | N/A | N/A |
| WPV3NTCCM | WPV3NTCCM - NT changes with closest WPV3 match | N/A | number | N/A | N/A | N/A |
| WPV3EPIDCM | WPV3EPIDCM - EPID of WPV3 closest match | N/A | text | N/A | N/A | N/A |
| WPV3CLUS | WPV3CLUS - Cluster WPV3 | N/A | text | N/A | N/A | N/A |
| SL1NTCSL1 | SL1NTCSL1 - NT changes with Sabin 1 | N/A | number | N/A | N/A | N/A |
| SL2NTCSL2 | SL2NTCSL2 - NT changes with Sabin 2 | N/A | number | N/A | N/A | N/A |
| SL3NTCSL3 | SL3NTCSL3 - NT changes with Sabin 3 | N/A | number | N/A | N/A | N/A |
| NOPV2LNTCNOPV2 | NOPV2LNTCNOPV2 - NT changes with nOPV2 | N/A | number | N/A | N/A | N/A |
| VDPV1NTCSL1 | VDPV1NTCSL1 - NT changes with Sabin 1 | N/A | number | N/A | N/A | N/A |
| VDPV1NTCCM | VDPV1NTCCM - NT changes with the closest VDPV1 match | N/A | number | N/A | N/A | N/A |
| VDPV1EPIDCM | VDPV1EPIDCM - EPID of the VDPV1 closest match | N/A | text | N/A | N/A | N/A |
| VDPV1EMER | VDPV1EMER - Emergence VDPV1 | N/A | text | N/A | N/A | N/A |
| VDPV2NTCSL2 | VDPV2NTCSL2 - NT changes with Sabin 2 | N/A | number | N/A | N/A | N/A |
| VDPV2NTCCM | VDPV2NTCCM - NT changes with the closest VDPV2 match | N/A | number | N/A | N/A | N/A |
| VDPV2EPIDCM | VDPV2EPIDCM - EPID of the VDPV2 closest match | N/A | text | N/A | N/A | N/A |
| VDPV2EMER | VDPV2EMER - Emergence VDPV2 | N/A | text | N/A | N/A | N/A |
| VDPV2NNTCNOPV2 | VDPV2NNTCNOPV2 - NT changes with nOPV2 | N/A | number | N/A | N/A | N/A |
| VDPV2NNTCCM | VDPV2NNTCCM - NT changes with closest VDPV2-n match | N/A | number | N/A | N/A | N/A |
| VDPV2NEPIDCM | VDPV2NEPIDCM - EPID of the VDPV2-n closest match | N/A | text | N/A | N/A | N/A |
| VDPV2NEMER | VDPV2NEMER - Emergence VDPV2-n | N/A | text | N/A | N/A | N/A |
| VDPV3NTCSL3 | VDPV3NTCSL3 - NT changes with Sabin 3 | N/A | number | N/A | N/A | N/A |
| VDPV3NTCCM | VDPV3NTCCM - NT changes with the closest VDPV3 match | N/A | number | N/A | N/A | N/A |
| VDPV3EPIDCM | VDPV3EPIDCM - EPID of the VDPV3 closest match | N/A | text | N/A | N/A | N/A |
| VDPV3EMER | VDPV3EMER - Emergence VDPV3 | N/A | text | N/A | N/A | N/A |
| DSQEPI | DSQEPI - Date sequencing result sent to EPI or NPL | N/A | datetime | N/A | N/A | N/A |
| SPSECSEQREFLAB | SPSECSEQREFLAB - Lab name referring isolates for secondary sequencing | N/A | text | NPL IRN = NPL IRN | N/A | N/A |
| NPL OMA = NPL OMA | ||||||
| RRL EGY = RRL EGY | ||||||
| RRL PAK = RRL PAK | ||||||
| RRL TUN = RRL TUN | ||||||
| CDC = CDC | ||||||
| NIID = NIID | ||||||
| OTHER = OTHER | ||||||
| SPSECSEQRECVLAB | SPSECSEQRECVLAB - Lab name receiving isolates for secondary sequencing | N/A | text | CDC = CDC | N/A | N/A |
| NIBSC = NIBSC | ||||||
| RIVM = RIVM | ||||||
| OTHER = OTHER | ||||||
| DREFSECSEQ | DREFSECSEQ - Date referred for secondary sequencing | N/A | datetime | N/A | N/A | N/A |
| FPTYPSPEC | FPTYPSPEC - Type of specimen sent | N/A | number | 1 = FTA card | N/A | N/A |
| 2 = Stool suspension | ||||||
| 3 = Original stool | ||||||
| 4 = Isolate | ||||||
| FPTYPISO | FPTYPISO - Type of isolate sent | N/A | number | 1 = L-Arm | N/A | N/A |
| 2 = R-Arm | ||||||
| SECSQREA | SECSQREA - Reason for secondary sequencing | N/A | number | 1 = Whole genome sequencing | N/A | N/A |
| 2 = Validation | ||||||
| 3 = Technical reason | ||||||
| 9 = Other | ||||||
| SECSEQOTHREA | SECSEQOTHREA - Other reasons for secondary sequencing | N/A | text | N/A | N/A | N/A |
| DRECSECSEQ | DRECSECSEQ - Date received by laboratory for secondary sequencing | N/A | datetime | N/A | N/A | N/A |
| SECSEQRES | SECSEQRES - Secondary Sequencing Results | N/A | text | N/A | N/A | N/A |
| DSECSEQRES | DSECSEQRES - Date Secondary Results | N/A | datetime | N/A | N/A | N/A |
| SECSEQCOMMENTS | SECSEQCOMMENTS - Comments | N/A | text | N/A | N/A | N/A |
| P1 | P1 - Polio type 1 result | N/A | number | N/A | N/A | CP1 |
| P2 | P2 - Polio type 2 result | N/A | number | N/A | N/A | CP2 |
| P3 | P3 - Polio type 3 result | N/A | number | N/A | N/A | CP3 |
| ENTERO | ENTERO - Non-polio enterovirus result | N/A | number | N/A | N/A | CENTERO |
| NEV | NEV - Non-enterovirus result | N/A | number | N/A | N/A | N/A |
| CREATEDBYLAB | CREATEDBYLAB - Created by Lab | N/A | boolean | 0 = No | N/A | N/A |
| 1 = Yes | ||||||