AFP Specimens

This data dictionary is mostly machine-generated and still needs to be validated by a human. If you notice issues or want to contribute to improve don’t hesitate to send an email to webifa@novel-t.ch.

Variable Variable name in the data entry Description Data type Variable options
Allowed Values Required
EPID EPID - Specimen ID N/A text N/A Yes
BARCODE BARCODE - Barcode N/A text N/A N/A
SPECNO SPECNO - Specimen number N/A text N/A Yes
SPPROCDESTLAB SPPROCDESTLAB - Destination lab name for sample processing N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
LABID LABID - Lab ID N/A text N/A N/A
DSTCOL DSTCOL - Date specimen collected N/A datetime N/A Yes
DSTFIELD DSTFIELD - Date specimen sent from field N/A datetime N/A N/A
DSTNAT DSTNAT - Date specimen received at national level N/A datetime N/A N/A
DSTSENT DSTSENT - Date specimen sent to laboratory N/A datetime N/A N/A
DSTLAB DSTLAB - Date specimen received at laboratory N/A datetime N/A N/A
SPPROCRECVLAB SPPROCRECVLAB - Lab name receiving sample for sample processing N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
STCOND STCOND - Specimen condition on receipt N/A number 1 = Good N/A
2 = Bad
STCONDPOOR STCONDPOOR - Reason for poor specimen condition N/A number 1 = Leakage of stool N/A
2 = Unsatisfactory quantity of stool
3 = Stool desiccated
4 = Labelling problems with specimen
6 = Cold chain
5 = Other
STCONDOTH STCONDOTH - Other reasons for poor quality N/A text N/A N/A
SPVIREFLAB SPVIREFLAB - Lab name referring sample for virus isolation N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
SPVIRECVLAB SPVIRECVLAB - Lab name receiving sample for virus isolation N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
DLRCULRES DLRCULRES - Date LR Arm results N/A datetime N/A N/A
LRCULRES LRCULRES - Cell culture results LR Arm N/A number 1 = L20B Positive N/A
2 = Negative
3 = Pending
DRLRCULRES DRLRCULRES - Date RLR Arm results N/A datetime N/A N/A
RLRCULRES RLRCULRES - Cell culture results RLR Arm N/A number 1 = L20B Positive N/A
4 = NPENT
2 = Negative
3 = Pending
DFCULRES DFCULRES - Date final cell culture results N/A datetime N/A N/A
DFCULRESEPI DFCULRESEPI - Date Final Cell Culture Results sent to EPI N/A datetime N/A N/A
SPITDREFLAB SPITDREFLAB - Lab name referring isolates for ITD N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
TYPSPECREF TYPSPECREF - Type of specimen sent N/A number 1 = Isolate N/A
2 = FTA card
3 = Stool suspension
4 = Others
SPECDES SPECDES - Type of isolate sent N/A number 1 = L-Arm N/A
2 = R-Arm
DLRITP DLRITP - Date L20B+ isolate (L-arm) referred for rRT-PCR ITD N/A datetime N/A N/A
DRLRITP DRLRITP - Date L20B+ isolate (R-arm) referred for rRT-PCR ITD N/A datetime N/A N/A
FPTYPSPECITD FPTYPSPECITD - Type of specimen sent N/A text 1 = Isolate N/A
2 = FTA card
3 = Stool suspension
4 = Other
FPTYPISOITD FPTYPISOITD - Type of isolate sent N/A number 1 = L-arm N/A
2 = R-arm
FPDATEREFLARM FPDATEREFLARM - Date specimen sent N/A datetime N/A N/A
WHYSEND WHYSEND - Reason for sending specimen N/A number 1 = Sent for ITD N/A
2 = Sent for comparative culture
3 = Sent for parallel testing
9 = Sent for other reason
SPITDRECVLAB SPITDRECVLAB - Lab name receiving isolates for ITD N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
ITDLABNO ITDLABNO - ITD Laboratory ID number N/A text N/A N/A
SRCISO SRCISO - Source of Isolate N/A number 1 = L-Arm N/A
2 = R-Arm
DLISO DLISO - Date L-Arm isolate received N/A datetime N/A N/A
DRISO DRISO - Date R-Arm isolate received N/A datetime N/A N/A
ISOCOND ISOCOND - isolate condition received N/A number 1 = Good N/A
2 = Bad
ISOCONDOTH ISOCONDOTH - Reason for poor condition N/A text N/A N/A
RRTPCRITD1 RRTPCRITD1 - Polio type 1 rRT-PCR ITD result N/A number 1 = NSL1 N/A
4 = SL1
12 = Not done
13 = Pending
RRTPCRITD2 RRTPCRITD2 - Polio type 2 rRT-PCR ITD result N/A number 1 = NSL2 N/A
2 = SL2
3 = PV2+_nOPV2+
4 = PV2+_nOPV2-
5 = PV2+_nOPV2 not-tested
6 = Not done
7 = Pending
RRTPCRITD3 RRTPCRITD3 - Polio type 3 rRT-PCR ITD result N/A number 3 = NSL3 N/A
6 = SL3
12 = Not done
13 = Pending
OTHDTCTS OTHDTCTS - Other detections N/A number 1 = NPEV N/A
2 = NEV
3 = Invalid
4 = Indeterminate
RRTPCRVDPV1 RRTPCRVDPV1 - Polio type 1 rRT-PCR VDPV result N/A number 1 = NSL1 N/A
2 = SL1
3 = Not required
RRTPCRVDPV3 RRTPCRVDPV3 - Polio type 3 rRT-PCR VDPV result N/A number 3 = NSL3 N/A
6 = SL3
11 = Not required
SPSEQREFLAB SPSEQREFLAB - Lab name referring isolates for sequencing N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
DISOSENTSEQ DISOSENTSEQ - Date isolate sent for sequencing N/A datetime N/A N/A
FPTYPSPECSEQ FPTYPSPECSEQ - Type of specimen sent N/A text 1 = FTA card N/A
2 = Stool suspension
3 = Original stool
4 = Isolate
FPTYPISOSEQ FPTYPISOSEQ - Type of isolate sent N/A number 1 = L-Arm N/A
2 = R-Arm
FITDRESULTS FITDRESULTS - ITD Final Results N/A text N/A N/A
DFITDRES DFITDRES - Date ITD final results N/A datetime N/A N/A
DFITDRESEPI DFITDRESEPI - Date final ITD results sent to EPI N/A datetime N/A N/A
SPSEQRECVLAB SPSEQRECVLAB - Lab name receiving isolates for sequencing N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CDC = CDC - Centres for Disease Control and Prevention
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
NIBSC = NIBSC - National Institute for Biological Standards and Control
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
IPP = IPP - Institut Pasteur de Paris
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
SEQLABID SEQLABID - Sequencing lab ID (sequence name) N/A text N/A N/A
DISORCVDSEQ DISORCVDSEQ - Date isolate received in Lab for sequencing N/A datetime N/A N/A
SEQTYPE SEQTYPE - Type of isolate received for sequencing N/A number 1 = FTA Card N/A
2 = Original specimen
3 = Isolate
SEQSERO1 SEQSERO1 - Selected for sequencing Serotype 1 N/A number 1 = Yes N/A
2 = No
SEQSERO2 SEQSERO2 - Selected for sequencing Serotype 2 N/A number 1 = Yes N/A
2 = No
SEQSERO3 SEQSERO3 - Selected for sequencing Serotype 3 N/A number 1 = Yes N/A
2 = No
SRCISOSEQ SRCISOSEQ - Source of isolate sequencing N/A number 1 = L-Arm N/A
2 = R-Arm
SEQRESULT SEQRESULT - Sequencing result N/A number 1 = WPV1 N/A
2 = WPV2
3 = WPV3
4 = SL1
5 = SL2
6 = nOPV2-L
7 = SL3
8 = VDPV1
9 = VDPV2
11 = VDPV2-n
10 = VDPV3
12 = OTHERS
W1SEQ W1SEQ - Sequence W1 N/A number 1 = Yes N/A
2 = No
W1GENO W1GENO - Genotype W1 N/A number 1 = WEAF/B N/A
2 = SOAS
3 = Other
W1CLUSTER W1CLUSTER - Cluster W1 N/A text N/A N/A
W1SERO W1SERO - Closest match W1 N/A text N/A N/A
W1PRCTSERO W1PRCTSERO - Percentage closest match W1 N/A decimal N/A N/A
W1NUCLEO W1NUCLEO - Nucleotide difference W1 N/A decimal N/A N/A
W2SEQ W2SEQ - Sequence W2 N/A number 1 = Yes N/A
2 = No
W2GENO W2GENO - Genotype W2 N/A number 1 = WEAF/B N/A
2 = SOAS
3 = Other
W2CLUSTER W2CLUSTER - Cluster W2 N/A text N/A N/A
W2SERO W2SERO - Closest match W2 N/A text N/A N/A
W2PRCTSERO W2PRCTSERO - Percentage closest match W2 N/A decimal N/A N/A
W2NUCLEO W2NUCLEO - Nucleotide difference W2 N/A decimal N/A N/A
W3SEQ W3SEQ - Sequence W3 N/A number 1 = Yes N/A
2 = No
W3GENO W3GENO - Genotype W3 N/A number 1 = WEAF/B N/A
2 = SOAS
3 = Other
W3CLUSTER W3CLUSTER - Cluster W3 N/A text N/A N/A
W3SERO W3SERO - Closest match W3 N/A text N/A N/A
W3PRCTSERO W3PRCTSERO - Percentage closest match W3 N/A decimal N/A N/A
W3NUCLEO W3NUCLEO - Nucleotide difference W3 N/A decimal N/A N/A
SL1SEQ SL1SEQ - Sequence SL1 N/A number 1 = Yes N/A
2 = No
SL1PRCT SL1PRCT - Percentage match SL1 N/A decimal N/A N/A
SL1NUCLEO SL1NUCLEO - Nucleotide difference SL1 N/A decimal N/A N/A
SL2SEQ SL2SEQ - Sequence SL2 N/A number 1 = Yes N/A
2 = No
SL2PRCT SL2PRCT - Percentage match SL2 N/A decimal N/A N/A
SL2NUCLEO SL2NUCLEO - Nucleotide difference SL2 N/A decimal N/A N/A
SL3SEQ SL3SEQ - Sequence SL3 N/A number 1 = Yes N/A
2 = No
SL3PRCT SL3PRCT - Percentage match SL3 N/A decimal N/A N/A
SL3NUCLEO SL3NUCLEO - Nucleotide difference SL3 N/A decimal N/A N/A
NOPV2SEQ NOPV2SEQ - Sequence nOPV2-L N/A number 1 = Yes N/A
2 = No
NOPV2PRCT NOPV2PRCT - Percentage match with nOPV2 N/A decimal N/A N/A
NOPV2NUCLEO NOPV2NUCLEO - Nucleotide difference with nOPV2 N/A decimal N/A N/A
SEQVDPV1 SEQVDPV1 - Sequence VDPV1 N/A number 1 = Yes N/A
2 = No
CLASSVDPV1 CLASSVDPV1 - Classification VDPV1 N/A number 1 = Ambiguous (a) N/A
2 = Circulating (c)
3 = Immunodeficient (i)
8 = Pending
NUCLEOV1SL1 NUCLEOV1SL1 - NT change with SL1 N/A number N/A N/A
PRCTV1SL1 PRCTV1SL1 - Homology with SL1 (%) N/A decimal N/A N/A
NUCLEOVDPV1 NUCLEOVDPV1 - NT change with closest match VDPV1 N/A number N/A N/A
PRCTVDPV1 PRCTVDPV1 - Homology with closest match VDPV1 (%) N/A decimal N/A N/A
CLOSESTMVDPV1 CLOSESTMVDPV1 - EPID of VDPV1 closest match Enter a proper EPID format - may be either ES or AFP text N/A N/A
EMERVDPV1 EMERVDPV1 - Emergence VDPV1 N/A text N/A N/A
SEQVDPV2 SEQVDPV2 - Sequence VDPV2 N/A number 1 = Yes N/A
2 = No
CLASSVDPV2 CLASSVDPV2 - Classification VDPV2 N/A number 1 = Ambiguous (a) N/A
2 = Circulating (c)
3 = Immunodeficient (i)
8 = Pending
NUCLEOV2SL2 NUCLEOV2SL2 - NT change with SL2 N/A number N/A N/A
PRCTV2SL2 PRCTV2SL2 - Homology with SL2 (%) N/A decimal N/A N/A
NUCLEOVDPV2 NUCLEOVDPV2 - NT change with closest match VDPV2 N/A number N/A N/A
PRCTVDPV2 PRCTVDPV2 - Homology with closest match VDPV2 (%) N/A decimal N/A N/A
CLOSESTMVDPV2 CLOSESTMVDPV2 - EPID of VDPV2 closest match Enter a proper EPID format - may be either ES or AFP text N/A N/A
EMERVDPV2 EMERVDPV2 - Emergence VDPV2 N/A text N/A N/A
SEQVDPV3 SEQVDPV3 - Sequence VDPV3 N/A number 1 = Yes N/A
2 = No
CLASSVDPV3 CLASSVDPV3 - Classification VDPV3 N/A number 1 = Ambiguous (a) N/A
2 = Circulating (c)
3 = Immunodeficient (i)
8 = Pending
NUCLEOV3SL3 NUCLEOV3SL3 - NT change with SL3 N/A number N/A N/A
PRCTV3SL3 PRCTV3SL3 - Homology with SL3 (%) N/A decimal N/A N/A
NUCLEOVDPV3 NUCLEOVDPV3 - NT change with closest match VDPV3 N/A number N/A N/A
PRCTVDPV3 PRCTVDPV3 - Homology with closest match VDPV3 (%) N/A decimal N/A N/A
CLOESTMVDPV3 CLOESTMVDPV3 - EPID of VDPV3 closest match Enter a proper EPID format - may be either ES or AFP text N/A N/A
EMERVDPV3 EMERVDPV3 - Emergence VDPV3 N/A text N/A N/A
SEQVDPV2N SEQVDPV2N - Sequence VDPV2-N N/A number 1 = Yes N/A
2 = No
CLASSVDPV2N CLASSVDPV2N - Classification VDPV2-N N/A number 1 = Ambiguous (a) N/A
2 = Circulating (c)
3 = Immunodeficient (i)
8 = Pending
NUCLEOV2NNOPV2 NUCLEOV2NNOPV2 - NT changes with nOPV2 N/A number N/A N/A
PRCTV2NNOPV2 PRCTV2NNOPV2 - Homology with nOPV2 (%) N/A decimal N/A N/A
NUCLEOVDPV2N NUCLEOVDPV2N - NT change with closest match VDPV2-n N/A number N/A N/A
CLOSESTMVDPV2N CLOSESTMVDPV2N - EPID of VDPV2-n closest match Enter a proper EPID format - may be either ES or AFP text N/A N/A
EMERVDPV2N EMERVDPV2N - Emergence VDPV2-n N/A text N/A N/A
DSEQRESENT DSEQRESENT - Date sequencing results entered N/A datetime N/A N/A
FSEQRES FSEQRES - Final Sequencing Result N/A text N/A N/A
DSEQRES DSEQRES - Date sequencing result reported to EPI N/A datetime N/A N/A
FSPRES FSPRES - Final Specimen Result N/A text N/A N/A
SPSECSEQREFLAB SPSECSEQREFLAB - Lab name referring isolates for secondary sequencing N/A text DZA = ALG - IPA - Institut Pasteur d'Algérie N/A
CAE = CAE - CPC - Centre Pasteur du Cameroun
CAF = CAF - IPB - Institut Pasteur de Bangui
CDC = CDC - Centres for Disease Control and Prevention
CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire
ETH = ETH - EPHI - Ethiopia Public Health Institute
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
MAD = MAD - IPM - Institut Pasteur de Madagascar
NIBSC = NIBSC - National Institute for Biological Standards and Control
IBD = NIE - IBD - College of Medicine, University of Ibadan
MDG = NIE - MDG - University of Maiduguri Teaching Hospital
IPP = IPP - Institut Pasteur de Paris
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
ZMB = ZAM - UTH - University Teaching Hospital of Zambia
ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe
DREFSECSEQ DREFSECSEQ - Date referred for secondary sequencing N/A datetime N/A N/A
FPTYPSPEC FPTYPSPEC - Type of specimen sent N/A number 1 = FTA card N/A
2 = Stool suspension
3 = Original stool
4 = Isolate
FPTYPISO FPTYPISO - Type of isolate sent N/A number 1 = L-Arm N/A
2 = R-Arm
SECSEQREA SECSEQREA - Reason for secondary sequencing N/A number 1 = Whole genome sequencing N/A
2 = Validation
3 = Technical reason
9 = Other
SECSEQOTHREA SECSEQOTHREA - Other Reasons for secondary sequencing N/A text N/A N/A
SPSECSEQRECVLAB SPSECSEQRECVLAB - Lab name receiving isolates for secondary sequencing N/A text CAE = CAE - CPC - Centre Pasteur du Cameroun N/A
CDC = CDC - Centres for Disease Control and Prevention
GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana
KEN = KEN - KEMRI - Kenya Medical Research Institute
NIBSC = NIBSC - National Institute for Biological Standards and Control
IBD = NIE - IBD - College of Medicine, University of Ibadan
IPP = IPP - Institut Pasteur de Paris
RDC = RDC - INRB - Institut National de Recherche Biomédicale
SEN = SEN - IPD - Institut Pasteur de Dakar
ZAF = SOA - NICD - National Institute For Communicable Diseases
UGA = UGA - UVRI - Uganda Virus Research Institute
DRECSECSEQ DRECSECSEQ - Date received by laboratory for secondary sequencing N/A datetime N/A N/A
SECSEQRES SECSEQRES - Secondary Sequencing Results N/A text N/A N/A
DSECSEQRES DSECSEQRES - Date Secondary Results N/A datetime N/A N/A
SECSEQCOMMENTS SECSEQCOMMENTS - Comments N/A text N/A N/A
CREATEDBYLAB CREATEDBYLAB - Created by Lab N/A boolean 0 = No N/A
1 = Yes