AFP Specimens
This data dictionary is mostly machine-generated and still needs to be validated by a human. If you notice issues or want to contribute to improve don’t hesitate to send an email to webifa@novel-t.ch.
| Variable | Variable name in the data entry | Description | Data type | Variable options | Variable name in the exports | |
|---|---|---|---|---|---|---|
| Allowed Values | Required | Poliolab.Csv | ||||
| EPID | EPID - Specimen ID | N/A | text | N/A | Yes | EpidNumber |
| BARCODE | BARCODE - Barcode | N/A | text | N/A | N/A | N/A |
| SPECNO | SPECNO - Specimen number | N/A | text | N/A | Yes | SpecimenNumber |
| SPPROCDESTLAB | SPPROCDESTLAB - Destination lab name for sample processing | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | LabName |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| LABID | LABID - Lab ID | N/A | text | N/A | N/A | ICLabID |
| DSTCOL | DSTCOL - Date specimen collected | N/A | datetime | N/A | Yes | DateStoolCollected |
| DSTFIELD | DSTFIELD - Date specimen sent from field | N/A | datetime | N/A | N/A | DateStoolSentfromField |
| DSTNAT | DSTNAT - Date specimen received at national level | N/A | datetime | N/A | N/A | DateStoolReceivedNatLevel |
| DSTSENT | DSTSENT - Date specimen sent to laboratory | N/A | datetime | N/A | N/A | DateStoolSentToLab |
| DSTLAB | DSTLAB - Date specimen received at laboratory | N/A | datetime | N/A | N/A | DateStoolReceivedinLab |
| SPPROCRECVLAB | SPPROCRECVLAB - Lab name receiving sample for sample processing | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | N/A |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| STCOND | STCOND - Specimen condition on receipt | N/A | number | 1 = Good | N/A | StoolCondition |
| 2 = Bad | ||||||
| STCONDPOOR | STCONDPOOR - Reason for poor specimen condition | N/A | number | 1 = Leakage of stool | N/A | N/A |
| 2 = Unsatisfactory quantity of stool | ||||||
| 3 = Stool desiccated | ||||||
| 4 = Labelling problems with specimen | ||||||
| 6 = Cold chain | ||||||
| 5 = Other | ||||||
| STCONDOTH | STCONDOTH - Other reasons for poor quality | N/A | text | N/A | N/A | N/A |
| SPVIREFLAB | SPVIREFLAB - Lab name referring sample for virus isolation | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | N/A |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| SPVIRECVLAB | SPVIRECVLAB - Lab name receiving sample for virus isolation | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | N/A |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| DLRCULRES | DLRCULRES - Date LR Arm results | N/A | datetime | N/A | N/A | DateLRarmResults |
| LRCULRES | LRCULRES - Cell culture results LR Arm | N/A | number | 1 = L20B Positive | N/A | CellCultureResultsLRarm |
| 2 = Negative | ||||||
| 3 = Pending | ||||||
| DRLRCULRES | DRLRCULRES - Date RLR Arm results | N/A | datetime | N/A | N/A | DateRLRArmResults |
| RLRCULRES | RLRCULRES - Cell culture results RLR Arm | N/A | number | 1 = L20B Positive | N/A | CellCultureResultsRLRArm |
| 4 = NPENT | ||||||
| 2 = Negative | ||||||
| 3 = Pending | ||||||
| DFCULRES | DFCULRES - Date final cell culture results | N/A | datetime | N/A | N/A | DateFinalCellCultureResults |
| DFCULRESEPI | DFCULRESEPI - Date Final Cell Culture Results sent to EPI | N/A | datetime | N/A | N/A | DateFinalResultsSentNatLevel |
| SPITDREFLAB | SPITDREFLAB - Lab name referring isolates for ITD | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | N/A |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| TYPSPECREF | TYPSPECREF - Type of specimen sent | N/A | number | 1 = Isolate | N/A | FTACARD |
| 2 = FTA card | ||||||
| 3 = Stool suspension | ||||||
| 4 = Others | ||||||
| SPECDES | SPECDES - Type of isolate sent | N/A | number | 1 = L-Arm | N/A | LarmIsolatesentforITD |
| 2 = R-Arm | ||||||
| DLRITP | DLRITP - Date L20B+ isolate (L-arm) referred for rRT-PCR ITD | N/A | datetime | N/A | N/A | DateLarmIsolateSentforITD |
| DRLRITP | DRLRITP - Date L20B+ isolate (R-arm) referred for rRT-PCR ITD | N/A | datetime | N/A | N/A | DateRarmIsolateSentforITD |
| FPTYPSPECITD | FPTYPSPECITD - Type of specimen sent | N/A | text | 1 = Isolate | N/A | N/A |
| 2 = FTA card | ||||||
| 3 = Stool suspension | ||||||
| 4 = Other | ||||||
| FPTYPISOITD | FPTYPISOITD - Type of isolate sent | N/A | number | 1 = L-arm | N/A | N/A |
| 2 = R-arm | ||||||
| FPDATEREFLARM | FPDATEREFLARM - Date specimen sent | N/A | datetime | N/A | N/A | N/A |
| WHYSEND | WHYSEND - Reason for sending specimen | N/A | number | 1 = Sent for ITD | N/A | N/A |
| 2 = Sent for comparative culture | ||||||
| 3 = Sent for parallel testing | ||||||
| 9 = Sent for other reason | ||||||
| SPITDRECVLAB | SPITDRECVLAB - Lab name receiving isolates for ITD | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | N/A |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| ITDLABNO | ITDLABNO - ITD Laboratory ID number | N/A | text | N/A | N/A | N/A |
| SRCISO | SRCISO - Source of Isolate | N/A | number | 1 = L-Arm | N/A | N/A |
| 2 = R-Arm | ||||||
| DLISO | DLISO - Date L-Arm isolate received | N/A | datetime | N/A | N/A | DateLarmIsolateRec |
| DRISO | DRISO - Date R-Arm isolate received | N/A | datetime | N/A | N/A | N/A |
| ISOCOND | ISOCOND - isolate condition received | N/A | number | 1 = Good | N/A | N/A |
| 2 = Bad | ||||||
| ISOCONDOTH | ISOCONDOTH - Reason for poor condition | N/A | text | N/A | N/A | N/A |
| RRTPCRITD1 | RRTPCRITD1 - Polio type 1 rRT-PCR ITD result | N/A | number | 1 = NSL1 | N/A | N/A |
| 4 = SL1 | ||||||
| 12 = Not done | ||||||
| 13 = Pending | ||||||
| RRTPCRITD2 | RRTPCRITD2 - Polio type 2 rRT-PCR ITD result | N/A | number | 1 = NSL2 | N/A | N/A |
| 2 = SL2 | ||||||
| 3 = PV2+_nOPV2+ | ||||||
| 4 = PV2+_nOPV2- | ||||||
| 5 = PV2+_nOPV2 not-tested | ||||||
| 6 = Not done | ||||||
| 7 = Pending | ||||||
| RRTPCRITD3 | RRTPCRITD3 - Polio type 3 rRT-PCR ITD result | N/A | number | 3 = NSL3 | N/A | N/A |
| 6 = SL3 | ||||||
| 12 = Not done | ||||||
| 13 = Pending | ||||||
| OTHDTCTS | OTHDTCTS - Other detections | N/A | number | 1 = NPEV | N/A | N/A |
| 2 = NEV | ||||||
| 3 = Invalid | ||||||
| 4 = Indeterminate | ||||||
| RRTPCRVDPV1 | RRTPCRVDPV1 - Polio type 1 rRT-PCR VDPV result | N/A | number | 1 = NSL1 | N/A | RRTPCRVDPV_1 |
| 2 = SL1 | ||||||
| 3 = Not required | ||||||
| RRTPCRVDPV3 | RRTPCRVDPV3 - Polio type 3 rRT-PCR VDPV result | N/A | number | 3 = NSL3 | N/A | RRTPCRVDPV_3 |
| 6 = SL3 | ||||||
| 11 = Not required | ||||||
| SPSEQREFLAB | SPSEQREFLAB - Lab name referring isolates for sequencing | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | N/A |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| DISOSENTSEQ | DISOSENTSEQ - Date isolate sent for sequencing | N/A | datetime | N/A | N/A | DateIsolateSentforSequencing |
| FPTYPSPECSEQ | FPTYPSPECSEQ - Type of specimen sent | N/A | text | 1 = FTA card | N/A | N/A |
| 2 = Stool suspension | ||||||
| 3 = Original stool | ||||||
| 4 = Isolate | ||||||
| FPTYPISOSEQ | FPTYPISOSEQ - Type of isolate sent | N/A | number | 1 = L-Arm | N/A | N/A |
| 2 = R-Arm | ||||||
| FITDRESULTS | FITDRESULTS - ITD Final Results | N/A | text | N/A | N/A | FinalITDResult |
| DFITDRES | DFITDRES - Date ITD final results | N/A | datetime | N/A | N/A | N/A |
| DFITDRESEPI | DFITDRESEPI - Date final ITD results sent to EPI | N/A | datetime | N/A | N/A | N/A |
| SPSEQRECVLAB | SPSEQRECVLAB - Lab name receiving isolates for sequencing | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | SequencingLab |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CDC = CDC - Centres for Disease Control and Prevention | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| NIBSC = NIBSC - National Institute for Biological Standards and Control | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| IPP = IPP - Institut Pasteur de Paris | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| SEQLABID | SEQLABID - Sequencing lab ID (sequence name) | N/A | text | N/A | N/A | SequenceName |
| DISORCVDSEQ | DISORCVDSEQ - Date isolate received in Lab for sequencing | N/A | datetime | N/A | N/A | DateIsolateRcvdForSeq |
| SEQTYPE | SEQTYPE - Type of isolate received for sequencing | N/A | number | 1 = FTA Card | N/A | N/A |
| 2 = Original specimen | ||||||
| 3 = Isolate | ||||||
| SEQSERO1 | SEQSERO1 - Selected for sequencing Serotype 1 | N/A | number | 1 = Yes | N/A | SelectedSeqSero1 |
| 2 = No | ||||||
| SEQSERO2 | SEQSERO2 - Selected for sequencing Serotype 2 | N/A | number | 1 = Yes | N/A | SelectedSeqSero2 |
| 2 = No | ||||||
| SEQSERO3 | SEQSERO3 - Selected for sequencing Serotype 3 | N/A | number | 1 = Yes | N/A | SelectedSeqSero3 |
| 2 = No | ||||||
| SRCISOSEQ | SRCISOSEQ - Source of isolate sequencing | N/A | number | 1 = L-Arm | N/A | SourceOfIsolateSeq |
| 2 = R-Arm | ||||||
| SEQRESULT | SEQRESULT - Sequencing result | N/A | number | 1 = WPV1 | N/A | N/A |
| 2 = WPV2 | ||||||
| 3 = WPV3 | ||||||
| 4 = SL1 | ||||||
| 5 = SL2 | ||||||
| 6 = nOPV2-L | ||||||
| 7 = SL3 | ||||||
| 8 = VDPV1 | ||||||
| 9 = VDPV2 | ||||||
| 11 = VDPV2-n | ||||||
| 10 = VDPV3 | ||||||
| 12 = OTHERS | ||||||
| W1SEQ | W1SEQ - Sequence W1 | N/A | number | 1 = Yes | N/A | W1Sequence |
| 2 = No | ||||||
| W1GENO | W1GENO - Genotype W1 | N/A | number | 1 = WEAF/B | N/A | GenotypeW1Sero1 |
| 2 = SOAS | ||||||
| 3 = Other | ||||||
| W1CLUSTER | W1CLUSTER - Cluster W1 | N/A | text | N/A | N/A | ClusterW1sero1 |
| W1SERO | W1SERO - Closest match W1 | N/A | text | N/A | N/A | BESTMATCHW1Sero1 |
| W1PRCTSERO | W1PRCTSERO - Percentage closest match W1 | N/A | decimal | N/A | N/A | PercentMatchW1Sero1 |
| W1NUCLEO | W1NUCLEO - Nucleotide difference W1 | N/A | decimal | N/A | N/A | NucleotidedifferenceW1 |
| W2SEQ | W2SEQ - Sequence W2 | N/A | number | 1 = Yes | N/A | W2Sequence |
| 2 = No | ||||||
| W2GENO | W2GENO - Genotype W2 | N/A | number | 1 = WEAF/B | N/A | GenotypeW2Sero2 |
| 2 = SOAS | ||||||
| 3 = Other | ||||||
| W2CLUSTER | W2CLUSTER - Cluster W2 | N/A | text | N/A | N/A | ClusterW2Sero2 |
| W2SERO | W2SERO - Closest match W2 | N/A | text | N/A | N/A | BESTMATCHW2SERO2 |
| W2PRCTSERO | W2PRCTSERO - Percentage closest match W2 | N/A | decimal | N/A | N/A | PercentMatchW2Sero2 |
| W2NUCLEO | W2NUCLEO - Nucleotide difference W2 | N/A | decimal | N/A | N/A | NucleotidedifferenceW2 |
| W3SEQ | W3SEQ - Sequence W3 | N/A | number | 1 = Yes | N/A | W3Sequence |
| 2 = No | ||||||
| W3GENO | W3GENO - Genotype W3 | N/A | number | 1 = WEAF/B | N/A | GenotypeW3Sero3 |
| 2 = SOAS | ||||||
| 3 = Other | ||||||
| W3CLUSTER | W3CLUSTER - Cluster W3 | N/A | text | N/A | N/A | ClusterW3Sero3 |
| W3SERO | W3SERO - Closest match W3 | N/A | text | N/A | N/A | BESTMATCHW3SERO3 |
| W3PRCTSERO | W3PRCTSERO - Percentage closest match W3 | N/A | decimal | N/A | N/A | PercentMatchW3Sero3 |
| W3NUCLEO | W3NUCLEO - Nucleotide difference W3 | N/A | decimal | N/A | N/A | NucleotidedifferenceW3 |
| SL1SEQ | SL1SEQ - Sequence SL1 | N/A | number | 1 = Yes | N/A | Sabin1 |
| 2 = No | ||||||
| SL1PRCT | SL1PRCT - Percentage match SL1 | N/A | decimal | N/A | N/A | PercentMatchSabinSero1 |
| SL1NUCLEO | SL1NUCLEO - Nucleotide difference SL1 | N/A | decimal | N/A | N/A | NucleotidediffSabin1 |
| SL2SEQ | SL2SEQ - Sequence SL2 | N/A | number | 1 = Yes | N/A | Sabin2 |
| 2 = No | ||||||
| SL2PRCT | SL2PRCT - Percentage match SL2 | N/A | decimal | N/A | N/A | PercentMatchSabinSero2 |
| SL2NUCLEO | SL2NUCLEO - Nucleotide difference SL2 | N/A | decimal | N/A | N/A | NucleotidediffSabin2 |
| SL3SEQ | SL3SEQ - Sequence SL3 | N/A | number | 1 = Yes | N/A | Sabin3 |
| 2 = No | ||||||
| SL3PRCT | SL3PRCT - Percentage match SL3 | N/A | decimal | N/A | N/A | PercentMatchSabinSero3 |
| SL3NUCLEO | SL3NUCLEO - Nucleotide difference SL3 | N/A | decimal | N/A | N/A | NucleotidediffSabin3 |
| NOPV2SEQ | NOPV2SEQ - Sequence nOPV2-L | N/A | number | 1 = Yes | N/A | N/A |
| 2 = No | ||||||
| NOPV2PRCT | NOPV2PRCT - Percentage match with nOPV2 | N/A | decimal | N/A | N/A | N/A |
| NOPV2NUCLEO | NOPV2NUCLEO - Nucleotide difference with nOPV2 | N/A | decimal | N/A | N/A | N/A |
| SEQVDPV1 | SEQVDPV1 - Sequence VDPV1 | N/A | number | 1 = Yes | N/A | VDPV1SeqSero1 |
| 2 = No | ||||||
| CLASSVDPV1 | CLASSVDPV1 - Classification VDPV1 | N/A | number | 1 = Ambiguous (a) | N/A | N/A |
| 2 = Circulating (c) | ||||||
| 3 = Immunodeficient (i) | ||||||
| 8 = Pending | ||||||
| NUCLEOV1SL1 | NUCLEOV1SL1 - NT change with SL1 | N/A | number | N/A | N/A | NucleotidediffVDPV1 |
| PRCTV1SL1 | PRCTV1SL1 - Homology with SL1 (%) | N/A | decimal | N/A | N/A | N/A |
| NUCLEOVDPV1 | NUCLEOVDPV1 - NT change with closest match VDPV1 | N/A | number | N/A | N/A | N/A |
| PRCTVDPV1 | PRCTVDPV1 - Homology with closest match VDPV1 (%) | N/A | decimal | N/A | N/A | N/A |
| CLOSESTMVDPV1 | CLOSESTMVDPV1 - EPID of VDPV1 closest match | Enter a proper EPID format - may be either ES or AFP | text | N/A | N/A | N/A |
| EMERVDPV1 | EMERVDPV1 - Emergence VDPV1 | N/A | text | N/A | N/A | N/A |
| SEQVDPV2 | SEQVDPV2 - Sequence VDPV2 | N/A | number | 1 = Yes | N/A | VDPV2SeqSero2 |
| 2 = No | ||||||
| CLASSVDPV2 | CLASSVDPV2 - Classification VDPV2 | N/A | number | 1 = Ambiguous (a) | N/A | N/A |
| 2 = Circulating (c) | ||||||
| 3 = Immunodeficient (i) | ||||||
| 8 = Pending | ||||||
| NUCLEOV2SL2 | NUCLEOV2SL2 - NT change with SL2 | N/A | number | N/A | N/A | N/A |
| PRCTV2SL2 | PRCTV2SL2 - Homology with SL2 (%) | N/A | decimal | N/A | N/A | N/A |
| NUCLEOVDPV2 | NUCLEOVDPV2 - NT change with closest match VDPV2 | N/A | number | N/A | N/A | NucleotidediffVDPV2 |
| PRCTVDPV2 | PRCTVDPV2 - Homology with closest match VDPV2 (%) | N/A | decimal | N/A | N/A | N/A |
| CLOSESTMVDPV2 | CLOSESTMVDPV2 - EPID of VDPV2 closest match | Enter a proper EPID format - may be either ES or AFP | text | N/A | N/A | N/A |
| EMERVDPV2 | EMERVDPV2 - Emergence VDPV2 | N/A | text | N/A | N/A | N/A |
| SEQVDPV3 | SEQVDPV3 - Sequence VDPV3 | N/A | number | 1 = Yes | N/A | VDPV3SeqSero3 |
| 2 = No | ||||||
| CLASSVDPV3 | CLASSVDPV3 - Classification VDPV3 | N/A | number | 1 = Ambiguous (a) | N/A | N/A |
| 2 = Circulating (c) | ||||||
| 3 = Immunodeficient (i) | ||||||
| 8 = Pending | ||||||
| NUCLEOV3SL3 | NUCLEOV3SL3 - NT change with SL3 | N/A | number | N/A | N/A | NucleotidediffVDPV3 |
| PRCTV3SL3 | PRCTV3SL3 - Homology with SL3 (%) | N/A | decimal | N/A | N/A | N/A |
| NUCLEOVDPV3 | NUCLEOVDPV3 - NT change with closest match VDPV3 | N/A | number | N/A | N/A | N/A |
| PRCTVDPV3 | PRCTVDPV3 - Homology with closest match VDPV3 (%) | N/A | decimal | N/A | N/A | N/A |
| CLOESTMVDPV3 | CLOESTMVDPV3 - EPID of VDPV3 closest match | Enter a proper EPID format - may be either ES or AFP | text | N/A | N/A | N/A |
| EMERVDPV3 | EMERVDPV3 - Emergence VDPV3 | N/A | text | N/A | N/A | N/A |
| SEQVDPV2N | SEQVDPV2N - Sequence VDPV2-N | N/A | number | 1 = Yes | N/A | N/A |
| 2 = No | ||||||
| CLASSVDPV2N | CLASSVDPV2N - Classification VDPV2-N | N/A | number | 1 = Ambiguous (a) | N/A | N/A |
| 2 = Circulating (c) | ||||||
| 3 = Immunodeficient (i) | ||||||
| 8 = Pending | ||||||
| NUCLEOV2NNOPV2 | NUCLEOV2NNOPV2 - NT changes with nOPV2 | N/A | number | N/A | N/A | N/A |
| PRCTV2NNOPV2 | PRCTV2NNOPV2 - Homology with nOPV2 (%) | N/A | decimal | N/A | N/A | N/A |
| NUCLEOVDPV2N | NUCLEOVDPV2N - NT change with closest match VDPV2-n | N/A | number | N/A | N/A | N/A |
| CLOSESTMVDPV2N | CLOSESTMVDPV2N - EPID of VDPV2-n closest match | Enter a proper EPID format - may be either ES or AFP | text | N/A | N/A | N/A |
| EMERVDPV2N | EMERVDPV2N - Emergence VDPV2-n | N/A | text | N/A | N/A | N/A |
| DSEQRESENT | DSEQRESENT - Date sequencing results entered | N/A | datetime | N/A | N/A | DateSeqResultsEntered |
| FSEQRES | FSEQRES - Final Sequencing Result | N/A | text | N/A | N/A | N/A |
| DSEQRES | DSEQRES - Date sequencing result reported to EPI | N/A | datetime | N/A | N/A | DateSeqResult |
| FSPRES | FSPRES - Final Specimen Result | N/A | text | N/A | N/A | N/A |
| SPSECSEQREFLAB | SPSECSEQREFLAB - Lab name referring isolates for secondary sequencing | N/A | text | DZA = ALG - IPA - Institut Pasteur d'Algérie | N/A | N/A |
| CAE = CAE - CPC - Centre Pasteur du Cameroun | ||||||
| CAF = CAF - IPB - Institut Pasteur de Bangui | ||||||
| CDC = CDC - Centres for Disease Control and Prevention | ||||||
| CIV = CIV - IPCI - Institut Pasteur de Côte d'Ivoire | ||||||
| ETH = ETH - EPHI - Ethiopia Public Health Institute | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| MAD = MAD - IPM - Institut Pasteur de Madagascar | ||||||
| NIBSC = NIBSC - National Institute for Biological Standards and Control | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| MDG = NIE - MDG - University of Maiduguri Teaching Hospital | ||||||
| IPP = IPP - Institut Pasteur de Paris | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| ZMB = ZAM - UTH - University Teaching Hospital of Zambia | ||||||
| ZWE = ZIM - NVRL - National Virology Reference Laboratory of Zimbabwe | ||||||
| DREFSECSEQ | DREFSECSEQ - Date referred for secondary sequencing | N/A | datetime | N/A | N/A | DatereferredtoCDC |
| FPTYPSPEC | FPTYPSPEC - Type of specimen sent | N/A | number | 1 = FTA card | N/A | N/A |
| 2 = Stool suspension | ||||||
| 3 = Original stool | ||||||
| 4 = Isolate | ||||||
| FPTYPISO | FPTYPISO - Type of isolate sent | N/A | number | 1 = L-Arm | N/A | N/A |
| 2 = R-Arm | ||||||
| SECSEQREA | SECSEQREA - Reason for secondary sequencing | N/A | number | 1 = Whole genome sequencing | N/A | N/A |
| 2 = Validation | ||||||
| 3 = Technical reason | ||||||
| 9 = Other | ||||||
| SECSEQOTHREA | SECSEQOTHREA - Other Reasons for secondary sequencing | N/A | text | N/A | N/A | N/A |
| SPSECSEQRECVLAB | SPSECSEQRECVLAB - Lab name receiving isolates for secondary sequencing | N/A | text | CAE = CAE - CPC - Centre Pasteur du Cameroun | N/A | N/A |
| CDC = CDC - Centres for Disease Control and Prevention | ||||||
| GHA = GHA - NMIMR - Noguchi Memorial Institute For Medical Research, University of Ghana | ||||||
| KEN = KEN - KEMRI - Kenya Medical Research Institute | ||||||
| NIBSC = NIBSC - National Institute for Biological Standards and Control | ||||||
| IBD = NIE - IBD - College of Medicine, University of Ibadan | ||||||
| IPP = IPP - Institut Pasteur de Paris | ||||||
| RDC = RDC - INRB - Institut National de Recherche Biomédicale | ||||||
| SEN = SEN - IPD - Institut Pasteur de Dakar | ||||||
| ZAF = SOA - NICD - National Institute For Communicable Diseases | ||||||
| UGA = UGA - UVRI - Uganda Virus Research Institute | ||||||
| DRECSECSEQ | DRECSECSEQ - Date received by laboratory for secondary sequencing | N/A | datetime | N/A | N/A | N/A |
| SECSEQRES | SECSEQRES - Secondary Sequencing Results | N/A | text | N/A | N/A | SequencingResultsCDC |
| DSECSEQRES | DSECSEQRES - Date Secondary Results | N/A | datetime | N/A | N/A | DateSequencingresults |
| SECSEQCOMMENTS | SECSEQCOMMENTS - Comments | N/A | text | N/A | N/A | N/A |
| CREATEDBYLAB | CREATEDBYLAB - Created by Lab | N/A | boolean | 0 = No | N/A | N/A |
| 1 = Yes | ||||||